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Are you sure you don't have bad hardware? ~Tanita Asaboosiski 12.Jul.03 01:13 AM a Web browser Domino Server All ReleasesLinux - RedHat
This just sounds weird.
First thing I'd do if I were you would be to put the applications on a known-stable Windows server and reimport the data if you can. I've never seen that lost agent note error you mentioned. And why are you getting it if your application isn't changing?
How much data is in the databases and what do your views look like? Sounds huge if you sucked them in from a SQL database.